Inchoates pymolrc

Here's my example ~/.pymolrc file.

# sets first residue to 0 on load
run ~/playground/pymol_scripts/oload.py
# for cealign; optimal superposition
run ~/playground/cealign/qkabsch.py
# alternate alignment program
run ~/playground/cealign/cealign.py
# for zeroing or easily renumbering residues
run ~/playground/pymol_scripts/zero.py
# for removing alternately located atoms
run ~/playground/pymol_scripts/removeAlt.py

set ribbon_width, 8
set antialias,2
set cartoon_fancy_helices,1
set ray_trace_mode,1
set depth_cue,0
set ray_trace_fog,0
set ray_opaque_background,0
set defer_builds_mode, 3

See Also

• Oload
• optAlign
• Cealign
• Zero
• removeAlt

• ribbon_width
• antialias
• cartoon_fancy_helices
• ray_trace_mode
• depth_cue
• ray_trace_fog
• ray_opaque_background
• defer_builds_mode