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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
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Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

* ConnectedCloud
Find connected clouds of objects in PyMOL
Colors all objects differently (Python script).
Find sequence or regular expression of amino acids in a protein.
Retrieves atom coordinates as Python objects.
Retrieves atom coordinates as Python array (list object).
Make named selections using regular expressions (protein sequence).
Prints a list of all residues in a selection (both Python and .pml).
Lists the color of all residues in a selection (both Python and .pml).
Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
Python method that returns true if a selection of a given name exists.
Moves two parts of one object into different directions.
Splits an object into
A Random PyMOL-generated Cover. See Covers.