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Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
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Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
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Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
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Type Python Script
Author(s) Christoph Gohlke
License BSD
This code has been put under version control in the project Pymol-script-repo


This script provides a library of functions for manipulation of matrices and vectors, useful in comparing alignments of various objects. It was written by Christoph Gohlke and is available along with many other scripts from his website.


The script must be imported in any other script that uses it. The easiest way to do this is to use the Pymol-script-repo.

import transformations

See also

The following scripts use

A Random PyMOL-generated Cover. See Covers.