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News & Updates
Official Release PyMOL v1.8.2 has been released on April 20, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Dump2CGO

= Overview =

Dumps a PyMOL object to a CGO object.

The Code

<source lang="python"> from pymol import cmd from pymol.cgo import *

def dump2surfaceCGO():

   CGOobj = []
   dumpedFile = open("dump.tmp").read()
   for block in dumpedFile.split('\n\n'):
       CGOobj.append(BEGIN)
       CGOobj.append(TRIANGLES)
       for line in block.split('\n'):
           if line == :
               continue
           vals = line.split()
           CGOobj.append(NORMAL)
           CGOobj.append(float(vals[3]))
           CGOobj.append(float(vals[4]))
           CGOobj.append(float(vals[5]))
           CGOobj.append(VERTEX)
           CGOobj.append(float(vals[0]))
           CGOobj.append(float(vals[1]))
           CGOobj.append(float(vals[2]))
       CGOobj.append(END)
   return CGOobj

def dump2meshCGO():

   CGOobj = []
   dumpedFile = open("dump.tmp").read()
   for block in dumpedFile.split('\n\n'):
       CGOobj.append(BEGIN)
       CGOobj.append(LINE_STRIP)
       for line in block.split('\n'):
           if  ..→
A Random PyMOL-generated Cover. See Covers.