From PyMolWiki

Script Categories

User Interface	Objects and Selections	System (OS/Filesystem/Web/etc)
Apropos Grepset ImmersiveViz Key Wait Mouse modes ObjectByArrows PowerMate Dial OS X Stereo Ray	AlphaToAll Color Objects ConnectedCloud FindSeq FindSurfaceResidues Get Coordinates I Get Coordinates II Grepsel List Colors List Secondary Structures List Selection Save sep Selection Exists Split Movement ToGroup Zero residues	FilterByMol LoadDir Pdbsurvey Process All Files In Directory PythonTerminal Read PDB-String
Structural Biology	Third Party	Biochemical Scripts
CreateSecondaryStructure DynoPlot FindSurfaceResidues Helicity check InterfaceResidues Iterate sses LigAlign Measure Distance Motif Rotamer Toggle Show NMR constrains Translate And Measure WriteSS	Rasmolify Transform odb WFMesh	Color h CreateAtom FindSurfaceResidues Pucker Resicolor Show aromatics Show charged Show hydrophilic Show hydrophobics
Math/Geometry/CGO
Bounding Box CGO Text Center Of Mass DrawBoundingBox Ellipsoid Modevectors Perp Maker Plane Wizard Symmetry Axis TransformSelectionByCameraView

Notes

• Feel free to add scripts (see rules below).
• Feel free to add new categories
• You can make script requests on this page's discussion page
• GIT Repository of all our scripts:

  git clone git://github.com/jlec/Pymol-script-repo.git

Rules

We want the script library to be as valuable as possible to the public. Therefore, please follow these rules when posting code to the wiki:

• Only post code if you have the legal right to do so
• All posted code must be released under some source license or freer (public domain).
  • Authors may maintain copyright
  • Only post links to code that is not open source licensed, do not copy it onto the wiki