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News & Updates
Official Release PyMOL v1.8.2 has been released on April 20, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
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Pytms

Type PyMOL Plugin
Download plugins/pytms.py
Author(s) Andreas Warnecke
License GPL-2.0
This code has been put under version control in the project Pymol-script-repo
PyTMs example: PTMs in red

PyTMs is a PyMOL plugin that enables to easily introduce a set of common post-translational modifications (PTMs) into protein models.
Latest version: 1.2 (November 2015)

Installation

PyTMS can be downloaded separately, or together with the pymol-script-repository
The pytms.py file should be placed in the plugins folder.

Using the GUI

In PyMOL, navigate to: Plugin --> PyTMs
PyTMs GUI
The supported PTM can be selected from the left panel. The options will appear on the right. For help, click the help button.
Note that available objects/selection ..→

A Random PyMOL-generated Cover. See Covers.