News & Updates
| New Software
|
CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
|
| New Script
|
cgo_arrow draws an arrow between two picked atoms.
|
| Tips & Tricks
|
Instructions for generating movie PDFs using .mpg movies from PyMOL.
|
| New Script
|
Cluster Count calculates statistics on the B-values for all atoms in the selected object.
|
| New Script
|
Make Figures aids you in making publication quality figures for the currently displayed scene.
|
| New Script
|
Distances RH
|
| PyMOL on the iPad
|
PyMOL is now available on the iPad as a free download from the AppStore. See pymol.org/mobile for more info.
|
| OS X Compatibility
|
Mac OS X 10.8 doesn't ship with X11. But, you can get the libraries here X11 Libraries.
|
| New Script
|
select_sites can set author/paper selections according to SITE annotation in pdb file
|
| New Script
|
b2transparency can set surface transparency based on atom b-factor
|
| New Extension
|
psico is a python module which extends PyMOL with many commands
|
| New Script
|
uniprot_features makes named selections for sequence annotations from uniprot
|
| New Plugin
|
Gyration_tensor Calculates chain-wise gyration tensor of a protein.
|
| New Script
|
set_phipsi can set phi/psi angles for all residues in a selection
|
| New Script
|
dehydron A plugin to calculate dehydrons and display them onto the protein structure. A dehydron is a main chain hydrogen bond incompletely shielded from water attack.
|
| New Script
|
pymol2glmol is script to export a scene in pymol to a webpage for GLmol. GLmol is a molecular viewer for Web browsers written in WebGL/Javascript. Like web Jmol, but MUCH faster. Try it out!
|
| New Script
|
cyspka is an experimental surface cysteine pKa predictor.
|
| New Plugin
|
Contact_Map_Visualizer visualize residues corresponding to the contact map. See CMPyMOL.
|
| New Script
|
spectrum_states colors states of multi-state object
|
| New Script
|
TMalign is a wrapper for the TMalign program
|
| Gallery Updates
|
The gallery has been updated to include a few new ideas and scripts for rendering
|
| New Script
|
save_settings can dump all changed settings to a file
|
| Tips & Tricks
|
Instructions for generating 3D PDFs using PyMOL.
|
| Wiki Update
|
Wiki has been updated. Please report any problems to the sysops.
|
| New Scripts
|
Create objects for each molecule or chain in selection with split_object and split_chains
|
| New Script
|
Rotkit: is a collection of usefull scripts to place your dye/molecule where you want. It includes a very handy, rotation around line, function.
|
| New Script
|
Forster-distance-calculator: Can be used as a pymol-python shortcut to calculate the Förster distance between dyes from different companies. Useful, if the user have pymol installed, but not python. This script is meant as a tool to finding the right dyes, when labelling suitable positions for the site-directed cysteine mutants. See DisplacementMap.
|
| New Script
|
propka: Fetches the pka values for your protein from the propka server. propka generates a pymol command file that make pka atoms, color and label them according to your protein. Inspection is made easy by grouping the pka atoms in the pymol menu.
|
| Older News
|
See Older News.
|
