News & Updates
| Official Release
|
PyMOL, AxPyMOL, and JyMOL v1.7.4 have all been released on December 3, 2014.
|
| New Plugin
|
PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
|
| PyMOL Open-Source Fellowship
|
Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
|
| Official Release
|
PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014.
|
| Official Release
|
PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014.
|
| New Plugin
|
Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
|
| New Plugin
|
MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
|
| 3D using Geforce
|
PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
|
| New Plugin
|
GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
|
| New Software
|
CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
|
| New Script
|
cgo_arrow draws an arrow between two picked atoms.
|
| Tips & Tricks
|
Instructions for generating movie PDFs using .mpg movies from PyMOL.
|
| Older News
|
See Older News.
|
|
Did you know...
Overview
The script selects atoms from the list of the contacts found by PISA.
First, we run PISA on our pdb file to find the interfaces. Then by using the ccp4_pisa script in PyMOL we separately select atoms for all interface types and individual interfaces. This generates many selections, two for each interface, allowing quick manipulation of (sometimes) extensive lists in PISA log file.
Usage
ccp4_pisa( pisafile )
Example 1
The script parses the XML output files from the PISA service or command line tool. A short description of how to download the XML output files is available here http://www.ebi.ac.uk/msd-srv/prot_int/pi_download.html.
(For example, the following URL downloads the interfaces in 2c7r.pdb http://www.ebi.ac.uk/pdbe/pisa/cgi-bin/interfaces.pisa?2c7r)
Make sure you import the ccp4_pisa script first.
..→
|
|
|
 A Random PyMOL-generated Cover. See Covers.
|
