Main Page

From PyMOLWiki
Jump to: navigation, search
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.4 have all been released on December 3, 2014.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014.
Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

Set Symmetry

set_symmetry can be used to define or redefine the crystal and spacegroup parameters for a molecule or map object.

USAGE

set_symmetry selection, a, b, c, alpha, beta, gamma, spacegroup

PYMOL API

cmd.set_symmetry(string selection, float a, float b, float c,
     float alpha,float beta, float gamma, string spacegroup)

Example

# PyMOL command lnie
set_symmetry 1a2p, 60, 60, 80, 90, 90, 120, P6122
 
# API
cmd.set_symmetry("1a2p", 60, 60, 80, 90, 90, 120, spacegroup="P6122")

NOTES

The new symmetry will be defined for every object referenced by the selection.

A Random PyMOL-generated Cover. See Covers.


Personal tools
Namespaces
Variants
Actions
Navigation
Toolbox