News & Updates
Official Release
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PyMOL v2.1 has been released on March 13, 2018.
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Selection keywords
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New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
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Plugin Update
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MOLE 2.5 is an updated version of channel analysis software in PyMOL
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New Script
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dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
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New Plugin
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LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
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New Plugin
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PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
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New Plugin
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Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
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New Plugin
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MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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3D using Geforce
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PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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Older News
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See Older News.
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Did you know...
Introduction
This program calculates and visualizes the gration tensors of a protein (based on geometry) for each chain in the PDB file.
How to get it
git clone https://github.com/emptyewer/Gyration_tensor.git
Required Dependencies on Linux and Mac OS X
sudo apt-get install python-tk python-numpy
Installing on Linux
- Navigate to plugins > install
- Locate the downloaded gyration_tensor.py file in the dialogbox and select 'OK'
- Quit and Restart 'pymol'
Usage
- Launch PyMOL
- Navigate to Plugins > Contact Map Visualizer in PyMOL
- When the first dialog box pops up, select PDB file and select 'OK'.
- The plugin calculates and outputs the Magnitude and Direction of the tensors in the debug window and draws the ..→
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A Random PyMOL-generated Cover. See Covers.
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