Main Page

From PyMOLWiki
Revision as of 17:24, 12 September 2016 by MichelleOttaviano (talk | contribs)
Jump to navigation Jump to search
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v1.8.2 has been released on April 20, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Seq view format

=== OVERVIEW ===

The seq_view_format setting controls how PyMOL displays the sequence viewer. (To turn on the sequence viewer, type, set seq_view, on.) The available formats are currently:

  • 0 = Display residues as single letter amino acid names
  • 1 = Display residues as triple letter amino acid names
  • 2 = Displays all atoms in each residue based on their atom name
  • 3 = Displays each peptide chain

SYNTAX

# usage
set seq_view_format, number

# default
set seq_view_format, 0

# triple letter amino acids
set seq_view_format, 1

SEE ALSO

Seq_view

A Random PyMOL-generated Cover. See Covers.