Difference between revisions of "Main Page"

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(Added new plugin Cavitomix)
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! New Plugin
 
! New Plugin
| [[CavitOmiX|CavitOmiX]] calculate [https://innophore.com Catalophore™ Cavities], predict protein structures with [https://www.nvidia.com/en-us/gpu-cloud/bionemo OpenFold by NVIDEA-BioNeMo], [https://ai.facebook.com/blog/protein-folding-esmfold-metagenomics/ ESMFold] and retrieve [https://www.deepmind.com/research/highlighted-research/alphafold Alphafold] models
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| [[CavitOmiX|CavitOmiX]] calculate [https://innophore.com Catalophore™ cavities], predict protein structures with [https://www.nvidia.com/en-us/gpu-cloud/bionemo OpenFold by NVIDIA-BioNeMo], [https://ai.facebook.com/blog/protein-folding-esmfold-metagenomics/ ESMFold] and retrieve [https://www.deepmind.com/research/highlighted-research/alphafold Alphafold] models
 
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! Official Release
 
! Official Release

Revision as of 07:08, 24 December 2022

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Create

create creates a new molecule object from a selection. It can also be used to create states in an existing object.

USAGE

create name, (selection) [, source_state [, target_state ]]
  • name = object to create (or modify)
  • selection = atoms to include in the new object
  • source_state (default: 0 - copy all states)
  • target_state = int: -1 appends after last state {default: 0}

PYMOL API

cmd.create(string name, string selection, int source_state, int target_state,int discrete)

NOTES

If the source and target states are zero (default), all states will be copied. Otherwise, only the indicated states will be copied.

Target state -1 will append new states.

User Comments/Examples

EXAMPLES

<source lang="python">

  1. merging two multi-state objects with the create command
  2. obj1 has 25 states and obj2 has 40 states

load multi_state_obj1, obj1 load multi_state_obj2, obj2

  1. merge the two multi-state objects back to back into obj3
  2. 0 ..→
A Random PyMOL-generated Cover. See Covers.