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Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v3.0 has been released on March 12, 2024.
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Multisave

The multisave command can save a multi-entry PDB file.

Every object in the given selection will have a HEADER record, and is terminated with END. Loading such a multi-entry PDB file into PyMOL will load each entry as a separate object.

This behavior is different to the save command, where a multi-object selection is written "flat" to a PDB file, without HEADER records.

Older versions could also export a proprietary binary "pmo" file format with this command. However, "pmo" format never supported multiple entries, support was partially broken in in the 1.7 and 1.8 versions, and was finally removed in 1.8.4.

Changes in PyMOL 1.8.4

  • CRYST1 records are written if symmetry is defined
  • Interpret "pattern" argument as an atom selection. Previous versions expected an object name pattern or a list of objects.
  • dropped "pmo" format support

Usage

multisave filename [, pattern [, state [, append ]]]

Arguments

  • filename = str: file path to be written
  • pattern = str: atom selection (before ..→
A Random PyMOL-generated Cover. See Covers.