# sets first residue to 0 on load
run ~/playground/pymol_scripts/oload.py
# for cealign; optimal superposition
run ~/playground/cealign/qkabsch.py
# alternate alignment program
run ~/playground/cealign/cealign.py
# for zeroing or easily renumbering residues
run ~/playground/pymol_scripts/zero.py
# for removing alternately located atoms
run ~/playground/pymol_scripts/removeAlt.py
 
set ribbon_width, 8
set antialias,2
set cartoon_fancy_helices,1
set ray_trace_mode,1
set depth_cue,0
set ray_trace_fog,0
set ray_opaque_background,0
set defer_builds_mode, 3