Difference between revisions of "User:Inchoate"
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| + | = My Info = | ||
If you are interested in Biophysical, Structural or Compuational Biology, please check out [http://www.bscb.utmb.edu/ BSCB@UTMB] -- my old school. | If you are interested in Biophysical, Structural or Compuational Biology, please check out [http://www.bscb.utmb.edu/ BSCB@UTMB] -- my old school. | ||
| Line 5: | Line 6: | ||
[[User:Inchoate|Tree]] 14:21, 3 April 2007 (CDT) | [[User:Inchoate|Tree]] 14:21, 3 April 2007 (CDT) | ||
| + | |||
| + | = My ~/.pymolrc = | ||
| + | <source lang="python"> | ||
| + | run ~/playground/pymol_scripts/oload.py | ||
| + | run ~/playground/cealign/qkabsch.py | ||
| + | run ~/playground/cealign/cealign.py | ||
| + | run ~/playground/pymol_scripts/find_bind.py | ||
| + | run ~/playground/pymol_scripts/zero.py | ||
| + | run ~/playground/pymol_scripts/removeAlt.py | ||
| + | run ~/playground/pymol_scripts/toGroup.py | ||
| + | |||
| + | one_letter ={'VAL':'V', 'ILE':'I', 'LEU':'L', 'GLU':'E', 'GLN':'Q', \ | ||
| + | 'ASP':'D', 'ASN':'N', 'HIS':'H', 'TRP':'W', 'PHE':'F', 'TYR':'Y', \ | ||
| + | 'ARG':'R', 'LYS':'K', 'SER':'S', 'THR':'T', 'MET':'M', 'ALA':'A', \ | ||
| + | 'GLY':'G', 'PRO':'P', 'CYS':'C'} | ||
| + | |||
| + | set ribbon_width, 8 | ||
| + | set antialias,2 | ||
| + | set cartoon_fancy_helices,1 | ||
| + | set ray_trace_mode,1 | ||
| + | set depth_cue,0 | ||
| + | set ray_trace_fog,0 | ||
| + | set ray_opaque_background,0 | ||
| + | set defer_builds_mode, 3 | ||
| + | </source> | ||
| + | |||
| + | = See Also = | ||
| + | [[oload]], [[Cealign]], [[find_bind]], [[zero]], [[removeAlt]], [[toGroup]], [[ribbon_width]], [[antialias]], [[cartoon_fancy_helices]], [[depth_cue]], [[ray_trace_fog]], [[ray_opaque_background]], [[defer_builds_mode]], [[ray_trace_mode]]. | ||
Revision as of 15:01, 26 May 2009
My Info
If you are interested in Biophysical, Structural or Compuational Biology, please check out BSCB@UTMB -- my old school.
Jason Vertrees, PhD
(javertre(at)cs_dot_dartmouth(dot2)edu)
School:: BSCB@UTMB
BEST :: BEST@UTMB
Biz. :: Andean Importers
Tree 14:21, 3 April 2007 (CDT)
My ~/.pymolrc
run ~/playground/pymol_scripts/oload.py
run ~/playground/cealign/qkabsch.py
run ~/playground/cealign/cealign.py
run ~/playground/pymol_scripts/find_bind.py
run ~/playground/pymol_scripts/zero.py
run ~/playground/pymol_scripts/removeAlt.py
run ~/playground/pymol_scripts/toGroup.py
one_letter ={'VAL':'V', 'ILE':'I', 'LEU':'L', 'GLU':'E', 'GLN':'Q', \
'ASP':'D', 'ASN':'N', 'HIS':'H', 'TRP':'W', 'PHE':'F', 'TYR':'Y', \
'ARG':'R', 'LYS':'K', 'SER':'S', 'THR':'T', 'MET':'M', 'ALA':'A', \
'GLY':'G', 'PRO':'P', 'CYS':'C'}
set ribbon_width, 8
set antialias,2
set cartoon_fancy_helices,1
set ray_trace_mode,1
set depth_cue,0
set ray_trace_fog,0
set ray_opaque_background,0
set defer_builds_mode, 3
See Also
oload, Cealign, find_bind, zero, removeAlt, toGroup, ribbon_width, antialias, cartoon_fancy_helices, depth_cue, ray_trace_fog, ray_opaque_background, defer_builds_mode, ray_trace_mode.