User contributions for Jaredsampson
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26 October 2017
- 09:5109:51, 26 October 2017 diff hist −3 Colorblindfriendly →Requirements: update to reflect support for older PyMOLs
- 00:4200:42, 26 October 2017 diff hist −2 m Colorblindfriendly →Usage: fix object name for consistency
- 00:4100:41, 26 October 2017 diff hist +1,281 Colorblindfriendly →Usage: Update usage for version 0.2; Add requirements section.
- 00:1700:17, 26 October 2017 diff hist +107 N File:Colorblindfriendly menu.png Screenshot of the color list menu added to the OpenGL GUI by the colorblindfriendly.py script in PyMOL 2.0. current
- 00:0400:04, 26 October 2017 diff hist −35 Colorblindfriendly →Colors: show 0-255 values instead.
25 October 2017
- 22:2522:25, 25 October 2017 diff hist +116 Get Color Indices add reference to Get_color_index
- 22:2322:23, 25 October 2017 diff hist +141 Get color index Add See Also and Categories current
- 22:2122:21, 25 October 2017 diff hist +226 N Get color index Create page
28 July 2017
- 20:2620:26, 28 July 2017 diff hist +5 Selection Algebra →Selection Operator/Modifier Table: fix vertical line display for "or" operator
16 January 2017
- 00:1900:19, 16 January 2017 diff hist +47 PyMOLProbity →Description: add link to repository
14 January 2017
- 13:4813:48, 14 January 2017 diff hist +200 PyMOLProbity →Getting Started: Update GUI section.
- 13:4113:41, 14 January 2017 diff hist +5 PyMOLProbity Add screenshot.
- 13:3913:39, 14 January 2017 diff hist +247 N File:PyMOLProbity GUI.png Screenshot of the "Review Flips" tab of the PyMOLProbity plugin GUI, where flippable side chains in the selected object can be inspected, animated between unflipped (i.e. Reduce-output) and flipped orientations, and selected for future operations. current
- 01:5201:52, 14 January 2017 diff hist +2,538 N PyMOLProbity Created page.
3 October 2016
- 15:0715:07, 3 October 2016 diff hist +6 Save Add COLLADA (.dae) to autodetected formats. current
7 June 2016
- 15:4215:42, 7 June 2016 diff hist +8 m PYMOL PATH →Contents: close <tt> tag current
- 14:0114:01, 7 June 2016 diff hist +911 User:Jaredsampson Update current
- 13:3113:31, 7 June 2016 diff hist +341 Linux Install →Get latest source from SVN: Add HTTP protocol as alternative to troubleshoot sf.net SVN connection.
28 March 2016
- 01:4401:44, 28 March 2016 diff hist +124 Cartoon →Various Transparency Levels: include mention of "extract"
26 February 2016
- 02:1902:19, 26 February 2016 diff hist +19 COLLADA Include first version to support COLLADA.
2 December 2015
- 12:3612:36, 2 December 2015 diff hist −1,602 Selection Algebra →Selection Operator/Modifier Table: converted to wiki markup and made several minor edits (e.g. periods at end of "effect" column sentences.)
10 November 2015
- 00:2800:28, 10 November 2015 diff hist +372 MAC Install →With xquartz intalled: This is untested, but just updating the flags to the current syntax listed in the homebrew/homebrew-science/pymol.rb formula.
- 00:1900:19, 10 November 2015 diff hist −250 MAC Install →Switch stereo: Renamed section, and rewrote most of the content because latest homebrew install no longer switches the stereo/mono paradigm as previously described.
- 00:0800:08, 10 November 2015 diff hist −75 MAC Install →3. Install PyMOL.: latest version doesn't require multiple install commands--everything is handled by the install script (apparently)
- 00:0600:06, 10 November 2015 diff hist +153 MAC Install →2. Install Xquartz.: add homebrew cask option to install Xquartz
29 August 2015
- 23:1723:17, 29 August 2015 diff hist −1 PYMOL PATH →Contents: typo
- 15:1815:18, 29 August 2015 diff hist +21 Plugin Manager add Plugins category
13 August 2015
- 17:3617:36, 13 August 2015 diff hist +40 Plane Wizard Improve handling of auto_zoom setting (store original setting, then re-set it).
7 June 2015
- 23:2223:22, 7 June 2015 diff hist +158 Plugins →Using Fink: Change title of section to reflect additonal package managers. Fix link for Fink, add links for MacPorts and Homebrew. Update install example to refer to pymol-py27 fink package and remove unnecessary tags.
- 17:0217:02, 7 June 2015 diff hist +8 Pytms Correct link to raw plugin file in repo.
- 16:4116:41, 7 June 2015 diff hist +21 Pytms Add plugins category.
20 May 2015
- 18:5218:52, 20 May 2015 diff hist +2,502 N Collada geometry mode Created current
- 12:2112:21, 20 May 2015 diff hist +3 Modeling and Editing Structures →Adding and using your own fragments: clarified that editing modules/pmg_tk/skins/normal/__init__.py would add a menu item, not a hotkey.
6 May 2015
- 10:3110:31, 6 May 2015 diff hist −8 Mset →EXAMPLES: fixed python comments to use # instead of //
16 April 2015
- 12:1212:12, 16 April 2015 diff hist +161 MAC Install →3. Install PyMOL.: Added sentence to indicate the end of the installation process.
- 12:0812:08, 16 April 2015 diff hist +31 MAC Install →1. Install homebrew.: updated homebrew install command per https://developer.github.com/changes/2014-04-25-user-content-security/
29 September 2014
- 18:5218:52, 29 September 2014 diff hist +3,624 N COLLADA Created page
13 August 2014
- 17:5417:54, 13 August 2014 diff hist −23 User:Jaredsampson No edit summary
- 14:4714:47, 13 August 2014 diff hist +128 Elbow angle →Syntax: added rationale for default limit residues current
12 August 2014
- 15:0015:00, 12 August 2014 diff hist +159 Cealign plugin →Comparison to PyMol: Whoops...fixed text to go with image order. Added PDB links.
- 14:4914:49, 12 August 2014 diff hist 0 m Cealign plugin →Comparison to PyMol: switched order of images for logical flow (align, then cealign)
28 July 2014
- 13:0813:08, 28 July 2014 diff hist +60 Outline →Example: added "Automation" heading. Added `outfile` variable in imagemagick script, and adjusted filenames for consistency.
24 July 2014
- 12:5112:51, 24 July 2014 diff hist +1,644 N Outline Created page
- 12:4712:47, 24 July 2014 diff hist +77 N File:Outline cleaned.png Cleaned-up version of Outline_composite.png, with extra outline lines erased. current
- 12:4512:45, 24 July 2014 diff hist +53 N File:Outline composite.png Composite of Outine_base.png and Outline_overlay.png. current
- 12:4212:42, 24 July 2014 diff hist +127 N File:Outline overlay.png Cytochrome C (3cyt) residues within 2Å of Lys85 are outlined in yellow, using `ray_trace_mode` and `ray_trace_color` settings. current
- 12:3912:39, 24 July 2014 diff hist +46 N File:Outline base.png Surface representation of Cytochrome C (3cyt). current
28 June 2014
- 12:5012:50, 28 June 2014 diff hist +34 Get View →SEE ALSO: added Model_Space_and_Camera_Space
- 12:1412:14, 28 June 2014 diff hist +5 Move No edit summary current
- 09:3609:36, 28 June 2014 diff hist 0 m View →Function Key Presets: capitalized title current