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File list
Date Name Thumbnail Size Description Versions
23:04, 5 December 2018 4gms colors.png (file) 289 KB Prepared in response to a pymol-users thread from 11/30/2018-12/5/2018 about the appearance of transparency in a published figure. Script to reproduce: bg_color white fetch 4gms, async=0 # hemagglutinin selections select ha, chain A select l130, ha... 1
23:17, 25 October 2017 Colorblindfriendly menu.png (file) 42 KB Screenshot of the color list menu added to the OpenGL GUI by the script in PyMOL 2.0. 1
12:39, 14 January 2017 PyMOLProbity GUI.png (file) 211 KB Screenshot of the "Review Flips" tab of the PyMOLProbity plugin GUI, where flippable side chains in the selected object can be inspected, animated between unflipped (i.e. Reduce-output) and flipped orientations, and selected for future operations. 1
11:47, 24 July 2014 Outline cleaned.png (file) 168 KB Cleaned-up version of Outline_composite.png, with extra outline lines erased. 1
11:45, 24 July 2014 Outline composite.png (file) 170 KB Composite of Outine_base.png and Outline_overlay.png. 1
11:42, 24 July 2014 Outline overlay.png (file) 7 KB Cytochrome C (3cyt) residues within 2Å of Lys85 are outlined in yellow, using `ray_trace_mode` and `ray_trace_color` settings. 1
11:39, 24 July 2014 Outline base.png (file) 166 KB Surface representation of Cytochrome C (3cyt). 1
10:56, 26 April 2013 20091111 Structure cover.jpg (file) 130 KB Cover of the 11 November 2009 issue of Structure. Artwork by Jared Sampson, Xiangpeng Kong lab, New York University School of Medicine. 1
13:45, 8 June 2012 Stanfield.png (file) 199 KB Example PDBs from Stanfield, et al., JMB 2006 as shown in Fig. 1 of that paper. was used to calculate the elbow angles and draw a representation of the vectors used in the calculation. 1
13:29, 8 June 2012 Elbow angle 3ghe.png (file) 191 KB View of the elbow_angle vector representation for the Fab fragment from PDB 3ghe. 1
12:29, 7 September 2010 1hiw orient2.png (file) 567 KB Demonstration of orient command with 1hiw, two trimers shown. 1
12:15, 7 September 2010 1hiw orient.png (file) 484 KB Demonstration of orient command with NCS symmetry of PDB 1hiw. 1