Main Page

hosted by

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates Official Release PyMOL v2.5 has been released on May 10, 2021. Python 3 New Python 3 compatibility guide for scripts and plugins POSF New PyMOL fellows announced for 2018-2019 Tutorial Plugins Tutorial updated for PyQt5 New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... PDB plugin == PDB PyMOL plugin == PDBe’s PyMOL plugin provides an easy way to visualise PDB data and annotations in PyMOL. This includes displaying individual molecules, Pfam, SCOP and CATH domains and viewing geometric validation for PDB entries based on PDBe's API. Installation The PDB PyMOL plugin works on PyMOL 1.6 or later PyMOL 1.6 Download the plugin from the following URL: http://www.ebi.ac.uk/pdbe/pdb-component-library/pymol_plugin/PDB_plugin.py PyMOL 1.7 or later Open the “plugin manager” Enter the following url in the “Install from PyMOL Wiki or URL http://www.ebi.ac.uk/pdbe/pdb-component-library/pymol_plugin/PDB_plugin.py This will add the following items to the Plugins menu: PDB Analysis - All PDB Analysis - Molecules PDB Analysis - Domains PDB Analysis - Validation PDB Analysis - Assemblies Screenshot of the menu To use each component click the menu item in the Plugins menu ..→

A Random PyMOL-generated Cover. See Covers.