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Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.4 has been released on May 20, 2020.
Python 3 New Python 3 compatibility guide for scripts and plugins
Official Release PyMOL v2.3 has been released on February 11, 2019.
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Select

select creates a named selection from an atom selection. Selections are one of the most powerful aspects of PyMOL and learning to use selections well is paramount to quickly achieving your goals in PyMOL.

Usage

select name [, selection [, enable [, quiet [, merge [, state ]]]]]

Convenience shortcut to create selection with name "sele":

select (selection)

Arguments

  • name = str: a unique name for the selection {default if skipped: sele}
  • selection = str: a selection-expression
  • enable = 0/1: show selection indicators {default: 1}
  • quiet = 0/1 {default: 0 for command, 1 for API}
  • merge = 0/1: update existing named selection {default: 0}
  • state = int: object state, affects spacial operators like within {default: 0 (all states)}

Examples

select near , (ll expand 8)
select near , (ll expand 8)
select bb, (name CA+N+C+O)
cmd.select("%s_%s"%(prefix,stretch), "none")

Notes

Type help selections for more ..→

A Random PyMOL-generated Cover. See Covers.