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Revision as of 22:27, 23 December 2022 by Steinkeg (talk | contribs) (Added new plugin Cavitomix)
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News & Updates
New Plugin CavitOmiX calculate Catalophore™ Cavities, predict protein structures with OpenFold by NVIDEA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
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ListSelection2

Type Python Script
Download figshare
Author(s) Pietro Gatti-Lafranconi
License CC BY 4.0

Overview

Alternative script to List_Selection that will:

  • list multiple residues once
  • include water and hetatoms
  • account for different chains/objects
  • produce a screen/printed output


Usage

listselection selection, [output=N/S/P, [HOH=Y/N ]]

where:

  • selection can be any existing or newly-defined selection
  • output controls if the list is hidden (default), printed on screen (S) or saved in a file (P)
  • HOH (default Y) allows to exclude (N) water residues from the list


Examples

PyMOL>listselection 1efa, output=P
Residues in '1efa': 1043
Results saved in listselection_1efa.txt


<source lang="python"> PyMOL>listselection sele, output=S, HOH=N Residues in 'sele, without HOH': ..→

A Random PyMOL-generated Cover. See Covers.