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Revision as of 10:57, 20 April 2016 by Speleo3 (talk | contribs) (PyMOL v1.8.2)
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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
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Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v1.8.2 has been released on April 20, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Set Color

Set_Color defines a new color with color indices (0.0-1.0). Numbers between 0 an 255 can be used as well. (If at least one value is larger than 1, pymol will interpret all 3 values as between 0 and 255). If an existing color name is used, the old color will be overridden.

USAGE

set_color name, [ red-float, green-float, blue-float ]
set_color name = [ red-float, green-float, blue-float ]  #(DEPRECATED)

PYMOL API

cmd.set_color( string name, float-list rgb )

EXAMPLES

PyMOL>set_color red, [1,0.01,0.01]
 Color: "red" defined as [ 1.000, 0.010, 0.010 ].
PyMOL>set_color khaki, [195,176,145]
 Color: "khaki" defined as [ 0.765, 0.690, 0.569 ].

These will be added to the end of the list of Pymol's color indices that you can view the Get Color Indices command.

See Also

A Random PyMOL-generated Cover. See Covers.