Main Page

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

New accounts: email jason (dot) vertrees (@) gmail dot com

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates Official Release PyMOL v1.8.2 has been released on April 20, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Bondpack Type PyMOL Plugin Download https://github.com/rasbt/BondPack Author(s) Sebastian Raschka License GNU GENERAL PUBLIC LICENSE BondPack A collection of PyMOL plugins to visualize atomic bonds. Introduction PyMOL is without any doubt a great tool to visualize protein and ligand molecules. However, drawing interactions between atoms can be often quite cumbersome when done manually. For the sake of convenience, I developed three plugins for PyMOL that will make our life as protein biologists a little bit easier. All three PyMOL plugins can be installed and used separately; they don't depend on each other, but rather complement each other. At the end of this article, you will find brief instructions on how to install plugins in PyMOL - a very quick and simple process. HydroBond HydroBond visualizes all potential polar contacts between protein and ligand molecules within a user-specified distance. The underlying function is based on the different ..→

A Random PyMOL-generated Cover. See Covers.