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| − | + | <br> | |
| + | * [[TOPTOC|'''Table of Contents''']] | ||
| + | * [[Special:Allpages|Alphabetized Index of all pages]] | ||
| − | + | * [[Improvements|Discussion of PyMolWiki Improvements]] | |
| + | <br> | ||
| + | == PyMol Wiki Home == | ||
| + | You have reached the home of the PyMolWiki, a user-driven web-oriented CMS. | ||
| + | We provide | ||
| + | * updates on [http://pymol.sf.net PyMol] | ||
| + | * a stable user-oriented documentation base | ||
| + | * a thorough treatment of the PyMol program | ||
| + | * feature-rich scripts for general PyMol use | ||
| − | http:// | + | == New Users == |
| + | Welcome! New users who wish to contribute appropriate content are welcome to join. Feel free to add any appropriate content; make an account and get started! | ||
| + | |||
| + | ==News== | ||
| + | ===PyMol=== | ||
| + | * Important bug fixed in [[Cealign|CE Align v0.5]] and [[Kabsch]]. Both updated. | ||
| + | * [[Cealign|CE Align v0.4]], code now available. See the [[Cealign]] page for changes. | ||
| + | * [[Cealign|CE Align v0.1]], code now available. Windows installer coming soon. | ||
| + | * [[Slerpy]], a set of pymol command extensions to simplify complex movie making is now available. | ||
| + | * Updated the [[Kabsch#The_New_Code|Kabsch]] code with a more elegant solution; fixed a small rotation bug. | ||
| + | * Pymol 0.99 is out! Get it [http://delsci.com/rel/099/ here]. | ||
| + | * A new version of APBS plugin is available on [http://www-personal.umich.edu/~mlerner/PyMOL/ Michael Lerner's Page]. | ||
| + | * New [http://www.delsci.com/beta Beta Releases] available. | ||
| + | * New cool [[ray]] tracing features added! | ||
| + | |||
| + | ===Wiki=== | ||
| + | * Added useful mini-script for re-assigning the B Factor column to something new and coloring it. | ||
| + | * captcha system installed. | ||
| + | * If you notice something out of the ordinary, please contact the admin. I updated some software. | ||
| + | * [[Settings]] now contains documentation on: | ||
| + | - helix roundness | ||
| + | - ribbon sampling | ||
| + | - cartoon sampling | ||
| + | - cartoon highlight coloring | ||
| + | - cartoon color blending vs discrete colors | ||
| + | - and more! now 48 documented (with examples); just 470 to go.... | ||
| + | |||
| + | * [[SURFNET]] information on reading surfaces from other programs added. | ||
| + | * Two new [[:Category:Plugins|Plugins]] have been added, [[NsSNP Loader]] and [[Proxy Config]]. | ||
| + | * Added a page that lists all [[Settings|PyMol settings]]. We need to start documenting these. | ||
| + | * [[MAC_Install]] page has been developed. It describes pymol and apbs issues specific to Mac OS X. | ||
| + | * [[APBS]] page has been established. | ||
| + | * [[APBS]] How to set this up on OS X and on Linux has been started but needs contributions. | ||
| + | |||
| + | ===News Archive=== | ||
| + | *See our [[Older_News]]. | ||
| + | |||
| + | == Links of Interest == | ||
| + | * [[TOPTOC|Top Level Table of Contents]] | ||
| + | * [[:Category:FAQ|Frequently Asked Questions]] -- new! | ||
| + | * [[PyMolWiki:Community_Portal| How to get involved!]] -- read me if you want to add something | ||
| + | * [[:Category:Script Library| Script Library]] -- add one! (rTools info!) | ||
| + | * [[:Category:Commands|PyMol Commands]] (>130 documented!) | ||
| + | * [[Settings|PyMol Settings]] (6 newly documented; only 470 to go...) | ||
| + | * [[:Special:Allpages| All Pages]] | ||
| + | * [[:Category:Plugins|Plugins]] | ||
| + | * [[:Special:Categories| See All Categories]] | ||
Revision as of 07:20, 12 March 2007
PyMol Wiki Home
You have reached the home of the PyMolWiki, a user-driven web-oriented CMS.
We provide
- updates on PyMol
- a stable user-oriented documentation base
- a thorough treatment of the PyMol program
- feature-rich scripts for general PyMol use
New Users
Welcome! New users who wish to contribute appropriate content are welcome to join. Feel free to add any appropriate content; make an account and get started!
News
PyMol
- Important bug fixed in CE Align v0.5 and Kabsch. Both updated.
- CE Align v0.4, code now available. See the Cealign page for changes.
- CE Align v0.1, code now available. Windows installer coming soon.
- Slerpy, a set of pymol command extensions to simplify complex movie making is now available.
- Updated the Kabsch code with a more elegant solution; fixed a small rotation bug.
- Pymol 0.99 is out! Get it here.
- A new version of APBS plugin is available on Michael Lerner's Page.
- New Beta Releases available.
- New cool ray tracing features added!
Wiki
- Added useful mini-script for re-assigning the B Factor column to something new and coloring it.
- captcha system installed.
- If you notice something out of the ordinary, please contact the admin. I updated some software.
- Settings now contains documentation on:
- helix roundness
- ribbon sampling
- cartoon sampling
- cartoon highlight coloring
- cartoon color blending vs discrete colors
- and more! now 48 documented (with examples); just 470 to go....
- SURFNET information on reading surfaces from other programs added.
- Two new Plugins have been added, NsSNP Loader and Proxy Config.
- Added a page that lists all PyMol settings. We need to start documenting these.
- MAC_Install page has been developed. It describes pymol and apbs issues specific to Mac OS X.
- APBS page has been established.
- APBS How to set this up on OS X and on Linux has been started but needs contributions.
News Archive
- See our Older_News.
Links of Interest
- Top Level Table of Contents
- Frequently Asked Questions -- new!
- How to get involved! -- read me if you want to add something
- Script Library -- add one! (rTools info!)
- PyMol Commands (>130 documented!)
- PyMol Settings (6 newly documented; only 470 to go...)
- All Pages
- Plugins
- See All Categories