News & Updates
| New Script
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See Consistent_View/_Map_Inspect, which is a toolkit for rapidly inspecting multiple maps and models.
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| Server updates
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The underlying servers upon which the PyMOLWiki runs were upgraded over the weekend. We are now fully functional. A deep thanks to BitGnome for donating time and hardware for the PyMOL project.
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| fetch_host setting
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Fetch_Host has been added to allow users to download PDBs from their PDB server (pdb, pdb euro, or pdb japan) of choice.
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| Fetch
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Fetch has been updated to also load electron density maps.
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| Schrodinger Buys PyMOL
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Schrodinger has purchased PyMOL. Development, support and open-source fun to continue! Read about the sale.
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| User Movie
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One of our users has posted another interesting movie, images from which were created with PyMOL.
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| New setting
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surface_cavity_mode to change how PyMOL displays cavities.
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| Search fixed.
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Thanks to a eagle-eyed user, our search has been fixed. Please let us know if you have any search-related problems.
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| New Command
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Cache—stores information on structures, so we don't have to recompute them.
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| Warren
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News about Warren DeLano's passing may be read on Warren's memorial page.
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| Setting
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Fetch_Path—Sets the default path for the fetch command.
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| New Script
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SelInside—Creates a custom selection of all atoms spatially inside some user-defined box.
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Did you know...
<source lang="python">
- This script writes the distance from
- atom mol1///25/ha to atom mol1///26/ha
- out to the file "dist.txt"
- Simply change your selections to see different distances.
- import PyMOL's command namespace
from pymol import cmd
- open dist.txt for writing
f=open('dist.txt','w')
- calculate the distance and store it in dst
dst=cmd.distance('tmp','mol1///25/ha','mol1///26/ha')
- write the formatted value of the distance ..→
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 A Random PyMOL-generated Cover. See Covers.
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