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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
Schrodinger Buys PyMOL Schrodinger has purchased PyMOL. Development, support and open-source fun to continue! Read about the sale.
New Command Cache—stores information on structures, so we don't have to recompute them.
Warren News about Warren DeLano's passing may be read on Warren's memorial page.
Setting Fetch_Path—Sets the default path for the fetch command.
New Script SelInside—Creates a custom selection of all atoms spatially inside some user-defined box.
New Script ContactsNCONT—The script selects residues and atoms from the list of the contacts found by NCONT from CCP4 Program Suite
Fun PCR Rap video made with PyMOL (YouTube).
PyMOLWiki Reformatted Main Page. Some delays might occur from resizing images, but that should go away once the images are cached.
PyMOLWiki New — Search the PyMOLWiki via GoogleSearch
PyMOL PyMOL is known to work under Mac OS X 10+ (Snow Leopard) using the new Fink and incentive builds. See Installing PyMOL under Fink.
PyMOL PyMOL now has a Set command for basic settings, and a Set_bond command for bond-only settings.
Did you know...

Plugins

Plugins are external modules that add functionality to PyMOL.

Plugins can be single Python files (*.py) or directories with an __init__.py file (see PluginArchitecture).

Looking for available Plugins? Browse the plugins category.

Installing Plugins

To install a plugin, open PyMOL and then go to

Plugin > Plugin Manager > Install new plugin

You will have the option to install from ..→

A Random PyMOL-generated Cover. See Covers.