fuse joins two objects into one by forming a bond. A copy of
the object containing the first atom is moved so as to form an
approximately reasonable bond with the second, and is then merged
with the first object.
Usage
fuse [ selection1 [, selection2 [, mode [, recolor [, move ]]]]]
Arguments
- selection1 = str: single atom selection (will be copied to object 2) {default: (pk1)}
- selection2 = str: single atom selection {default: (pk2)}
- mode = int: {default: 0}
- mode=0:
- mode=1: adopt segi/chain/resn`resi
- mode=2: adopt segi/chain
- mode=3: don't move and don't create a bond, just combine into single object
- recolor = bool: recolor C atoms to match target {default: 1}
- move = bool: {default: 1}
Example
Phosphorylate a serine residue:
fetch 1ubq, async=0
fragment phosphite
remove phosphite & elem H
fuse phosphite & elem P, /1ubq///65/OG, mode=1
delete phosphite
show sticks, resi 65
orient resi 65
unpick
Notes
Each selection must include a single atom in each ..→
