B2transparency

Type	Python Module
Download	scripts/b2transparency.py
Author(s)	Thomas Holder
License	BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

b2transparency can set transparency settings like transparency or sphere_transparency for each atom scaled by b-factor (or any other numeric atomic property).

Usage

b2transparency [ selection [, setting [, minimum [, maximum [, var ]]]]]

Example

# some dummy molecule with increasing b-factor along the chain
fab AAAAAAAAAAAAA
alter all, b=resv

b2transparency all

as sticks
show surface

set surface_color, gray

See Also

• spectrum