Main Page

hosted by

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org

News & Updates
Official Release	PyMOL v2.4 has been released on May 20, 2020.
Python 3	New Python 3 compatibility guide for scripts and plugins
Official Release	PyMOL v2.3 has been released on February 11, 2019.
POSF	New PyMOL fellows announced for 2018-2019
Tutorial	Plugins Tutorial updated for PyQt5
New Plugin	ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...
Get session Returns a dictionary representation the currently loaded PyMOL session.The session file (.pse) is a compressed version of its output. By using this API, user scripts can access many interesting properties which are otherwise inaccessible. Examples include Pymol2glmol and get_raw_distances scripts. WARNING: This API is undocumented API, intended for internal use. Use it only when it is necessary. Usage dict cmd.get_session(names='', partial=0) Return value The returned dictionary has following key-value pairs. Some entries are missing if using partial=1. main: An array encoding window size. For example, [640, 480] color_ext: settings: An array of PyMOL's global settings. They are dumped by SettingAsPyList in layer1/Setting.c. Further details will not be discussed because scripts can access these values from cmd.get API. colors: If you have defined color names by Set Color, they are described here. Default color names (red, blue, ..→

Usage