Jump to content

Main Page

From PyMOL Wiki
Revision as of 18:53, 9 March 2017 by Speleo3 (talk | contribs) (v1.8.6)
hosted by
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v1.8.6 has been released on March 9, 2017.
Official Release PyMOL v1.8.4 has been released on October 4, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...
Type Python Module
Download scripts/movie_color_fade.py
Author(s) Andreas Warnecke
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo
movie_color_fade example
movie_color_fade example

movie_color_fade is like movie_fade, but will fade colors in a movie. Simply specify the arguments (see below).

Usage

 movie_color_fade [ startframe [, startcolor [, endframe [, endcolor [, selection ]]]]]
 help movie_color_fade

Arguments

  • startframe, endframe = beginning and end movie frame for fading
    • if omitted, the current or last frame will be respectively set automatically
  • startcolor, endcolor = coloring at start and end
  • selection: target selection

Examples

This example yields the movie to the top ..→

A Random PyMOL-generated Cover. See Covers.