News & Updates
| Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7.4 have all been released on December 3, 2014.
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| New Plugin
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PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
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| PyMOL Open-Source Fellowship
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Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
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| Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014.
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| Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014.
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| New Plugin
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Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
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| New Plugin
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MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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| 3D using Geforce
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PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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| New Plugin
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GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
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| New Software
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CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
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| New Script
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cgo_arrow draws an arrow between two picked atoms.
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| Tips & Tricks
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Instructions for generating movie PDFs using .mpg movies from PyMOL.
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| Older News
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See Older News.
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Did you know...
<source lang="python">
- Pymol script copyright Matthew O'Meara and Xavier Ambroggio 2007
- Last updated Nov 29, 2007
- Draw an axis given a point and a direction. Optionally give color,
- length and width.
- Usage: from the pymol menu click file->run... then find this file.
- Then at the prompt, type
- draw_axis x,y,z, i,k,j
- where (x,y,z) is the point and (i,k,j) is the direction
- Also one can run the script as follows
- draw_axis x,y,z, i,k,j, length r,g,b, width,
- where (r,g,b) is the color for the line in red, green, colors,
- width is the thickness of the line and length is the length of the
- line.
- For a fun example of the script run from the command line after the
- script is loaded
- draw_axis_example
from pymol.cgo import * # get constants
from pymol import cmd
import math
class Counter:
def __init__(self):
self.state = 1
counter = Counter()
def draw_axis(x=None, ..→
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 A Random PyMOL-generated Cover. See Covers.
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