News & Updates
| Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7.4 have all been released on December 3, 2014.
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| New Plugin
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PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
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| PyMOL Open-Source Fellowship
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Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
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| Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014.
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| Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014.
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| New Plugin
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Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
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| New Plugin
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MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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| 3D using Geforce
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PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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| New Plugin
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GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
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| New Software
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CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
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| New Script
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cgo_arrow draws an arrow between two picked atoms.
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| Tips & Tricks
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Instructions for generating movie PDFs using .mpg movies from PyMOL.
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| Older News
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See Older News.
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Did you know...
Introduction
This script-kit is a collection of small script to be able to precisely to put a molecule (like a dye) where you want in relation to a protein.
You can also create rotational states of a domain or simulate a dye freedom.
It simply makes the PyMOL TTT matrixes, in a easy and user friendly way. The calls to the functions available in PyMOL, takes care of all the
conversion of input and such.
If you are interested in this, you might also want to check out the PyMOL Chempy module that is included in PyMOL. It provides handy vector and matrix functions.
Functions available in PyMOL
- rotateline(Pos1,Pos2,degangle,molecule):
- "Pos1->Pos2" define a line whereabout "molecule" will be rotated "degangle" degrees
- rotateline Pos1=P513C_CA, Pos2=P513C_CB, degangle=5, molecule=Atto590
- rotateline Pos1=dyeatom87, Pos2=dyeatom85, ..→
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 A Random PyMOL-generated Cover. See Covers.
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