News & Updates
| Official Release
|
http://pymol.org today, January 14, 2014.
|
| New Plugin
|
Bondpack is a a collection of PyMOL plugins for easy visualization of atomic bonds.
|
| New Plugin
|
MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
|
| 3D using Geforce
|
PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
|
| New Plugin
|
GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
|
| New Software
|
CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
|
| New Script
|
cgo_arrow draws an arrow between two picked atoms.
|
| Tips & Tricks
|
Instructions for generating movie PDFs using .mpg movies from PyMOL.
|
| Older News
|
See Older News.
|
|
Did you know...
Introduction
PyMOL Plugin for displaying polar contacts. Good hydrogen bonds (as determined by PyMOL) are shown in yellow. Electrostatic clashes (donor-donor or acceptor-acceptor) are shown in red. Close (<4.0 A) but not ideal contacts are shown in purple. Cutoffs are configurable. Exports the command `contacts` which takes two selections and an optional name for the generated contacts group. Alternatively, the selections can be chosen using a dialog box accessible from the Plugins menu.
Usage
show_contacts sel1, sel2, result="contacts", cutoff=3.6, bigcutoff=4.0
Required Arguments
- sel1 = first selection
- sel2 = second selection
Optional Arguments
- result = name of created group containing contacts
- cutoff = cutoff for good contacts (yellow dashes)
- bigcutoff = ..→
|
|
|
 A Random PyMOL-generated Cover. See Covers.
|
