News & Updates
| New Plugin
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Contact_Map_Visualizer visualize residues corresponding to its contact map
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| New Script
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spectrum_states colors states of multi-state object
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| New Script
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TMalign is a wrapper for the TMalign program
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| Gallery Updates
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The gallery has been updated to include a few new ideas and scripts for rendering
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| New Script
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save_settings can dump all changed settings to a file
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| Tips & Tricks
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Instructions for generating 3D PDFs using PyMOL.
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| Wiki Update
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Wiki has been updated. Please report any problems to the sysops.
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| New Scripts
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Create objects for each molecule or chain in selection with split_object and split_chains
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| New Script
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Rotkit: is a collection of usefull scripts to place your dye/molecule where you want. It includes a very handy, rotation around line, function.
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| New Script
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Forster-distance-calculator: Can be used as a pymol-python shortcut to calculate the Förster distance between dyes from different companies. Useful, if the user have pymol installed, but not python. This script is meant as a tool to finding the right dyes, when labelling suitable positions for the site-directed cysteine mutants. See DisplacementMap.
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| New Script
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propka: Fetches the pka values for your protein from the propka server. propka generates a pymol command file that make pka atoms, color and label them according to your protein. Inspection is made easy by grouping the pka atoms in the pymol menu.
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| Older News
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See Older News.
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Did you know...
= Overview =
This script will return the number of distinct molecular objects in a given selection. If no selection is given, the script assumes "sele" the named mouse selection.
Example
<source lang="python">
- run the script
run count_molecules_in_sel.py
- grab a protein from the PDB
fetch 2f56, async=0
- select all the urea molecules
select resn URE
- should count 11 molecules
count_molecules_in_selection
- change the selection ..→
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 A Random PyMOL-generated Cover. See Covers.
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