User contributions for Inchoate
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2 November 2007
- 16:0016:00, 2 November 2007 diff hist +47 Cartoon dumbbell length No edit summary current
- 15:5915:59, 2 November 2007 diff hist +47 Cartoon discrete colors No edit summary
- 15:5915:59, 2 November 2007 diff hist +31 Reflect No edit summary current
- 15:5915:59, 2 November 2007 diff hist +37 Ribbon color No edit summary
- 15:5915:59, 2 November 2007 diff hist +39 Ribbon sampling No edit summary
- 15:5915:59, 2 November 2007 diff hist +37 Ribbon smooth No edit summary
- 15:5815:58, 2 November 2007 diff hist +34 N Ribbon width New page: Ribbon width
- 15:5815:58, 2 November 2007 diff hist +42 Cartoon oval width No edit summary
- 15:5815:58, 2 November 2007 diff hist +44 Cartoon oval quality No edit summary current
- 15:5715:57, 2 November 2007 diff hist +43 Cartoon oval length No edit summary
- 15:5715:57, 2 November 2007 diff hist +107 Cartoon nucleic acid mode No edit summary current
- 15:5615:56, 2 November 2007 diff hist +64 N Category:Nucleic Acids New page: = Overview = All things related to nucleic acids should go here. current
- 15:5615:56, 2 November 2007 diff hist +54 Cartoon nucleic acid color →See Also
- 15:5515:55, 2 November 2007 diff hist +50 Cartoon nucleic acid color No edit summary
- 15:4615:46, 2 November 2007 diff hist +45 Seq view overlay No edit summary
1 November 2007
- 19:1019:10, 1 November 2007 diff hist −10 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 19:0919:09, 1 November 2007 diff hist +6,928 N Modeling and Editing Structures New page: =Modeling in PyMOL= ==Saving with transformed coordinates== Here is a simple script that saves the molecule with coordinates from the current orientation. (invoke it with 'run save_trans...
- 19:0919:09, 1 November 2007 diff hist −10 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 19:0719:07, 1 November 2007 diff hist +1,818 N Scripting FAQs New page: ==Script within a Structure== Q: Is there a way to embed a script within a PDB structure? A: Yes, there are two ways * Use the Read_Pdbstr command like, delete all cmd.read_pdbstr("...
31 October 2007
- 13:2313:23, 31 October 2007 diff hist +88 Main Page →Plugins/Scripts
29 October 2007
- 15:5815:58, 29 October 2007 diff hist +2 m Main Page No edit summary
- 11:1611:16, 29 October 2007 diff hist +17 Publication Quality Images →See Also
- 11:1211:12, 29 October 2007 diff hist +47 m Main Page →Welcome to the PyMOL Wiki
- 11:0811:08, 29 October 2007 diff hist +18 PDB Loader Service →Comments
- 11:0111:01, 29 October 2007 diff hist +39 m Caver No edit summary
- 11:0111:01, 29 October 2007 diff hist +63 N Category:Surfaces and Voids New page: = Overview = Page for detecting surfaces and voids in proteins. current
- 11:0011:00, 29 October 2007 diff hist −29 m Main Page →News
- 10:5910:59, 29 October 2007 diff hist +299 Older News →Older News
- 10:5810:58, 29 October 2007 diff hist −54 m Main Page →News
- 10:5410:54, 29 October 2007 diff hist +40 Super No edit summary
- 10:5410:54, 29 October 2007 diff hist +5 m Cealign plugin No edit summary
- 10:5310:53, 29 October 2007 diff hist +36 Cealign plugin No edit summary
- 10:5310:53, 29 October 2007 diff hist +50 Kabsch No edit summary
- 10:5310:53, 29 October 2007 diff hist +107 N Category:Structure Alignment New page: == Overview == PyMOL and its third party software offer some good options for quality structure alignments. current
- 10:5210:52, 29 October 2007 diff hist +24 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 10:5110:51, 29 October 2007 diff hist +39 Align No edit summary
- 10:4910:49, 29 October 2007 diff hist −10 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 10:4810:48, 29 October 2007 diff hist +5,578 N Plugins Tutorial New page: ==Learn By Example== This tutorial is a more sophisticated version of the PDB Loader Service plugin that is bundled with PyMol. It is a relatively simple plugin, but should prove to b...
- 10:4510:45, 29 October 2007 diff hist +1,487 N Python Integration New page: ==Launching Python programs from PyMOL == Running a Python script from PyMOL, usually the command: <source lang="python"> run script.py </source> Is enough. Of course, the file script.py needs to be in ...
- 10:4410:44, 29 October 2007 diff hist −10 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 10:4310:43, 29 October 2007 diff hist +372 N Surfaces and Voids New page: Help with integrating output from programs that generate/analyse surfaces and voids in molecules. See also: #http://sourceforge.net/search/?group_id=4546&words=cavity&type_of_search=mlis...
- 10:4210:42, 29 October 2007 diff hist −20 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 10:4210:42, 29 October 2007 diff hist +1,185 N Software Codecs New page: == Codecs == I've made movies with the DivX codec and those, in my experience, make the best movies. They take a while to encode, and are large, but have the best output quality. ===Mpl...
- 10:4110:41, 29 October 2007 diff hist −10 m TOPTOC →PyMolWiki Top-Level Table Of Contents
- 10:4010:40, 29 October 2007 diff hist +3,788 N PovRay New page: ==Nice PovRay settings== I typically use the make_pov.py script and "run" it from pymol once to load the function, and then I do ''make_pov('povray.inp')'' to create the povray.inp file. T...
28 October 2007
- 17:4817:48, 28 October 2007 diff hist +404 Talk:Main Page No edit summary
- 17:4617:46, 28 October 2007 diff hist −14 Slerpy Updated a link.
- 17:4417:44, 28 October 2007 diff hist 0 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 17:4417:44, 28 October 2007 diff hist −5 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 17:4217:42, 28 October 2007 diff hist +5,298 N Making Movies New page: ==Encoding video files== ===Animated GIF=== Quality note: Converting to video generally leads to a loss of quality and inflated file sizes. Gif animation gives a good alternative, retaini...