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Revision as of 16:54, 12 March 2024 by JarrettJohnson (talk | contribs) (PyMOL 3.0 release)
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Welcome to the PyMOL Wiki!
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Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v3.0 has been released on March 12, 2024.
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...
Cache manages storage of precomputed results, such as molecular surfaces.

Usage

cache action [, scenes [, state ]]

where, the arguments are:

action

string: enable, disable, read_only, clear, or optimize

scenes

string: a space-separated list of scene names (default: )

state

integer: state index (default: -1)

Examples

cache enable
cache optimize
cache optimize, F1 F2 F5

Notes

"cache optimize" will iterate through the list of scenes provided (or all defined scenes), compute any missing surfaces, and store them in the cache for later reuse.

API

cmd.cache(string action, string scenes, int state, int quiet)
A Random PyMOL-generated Cover. See Covers.