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Revision as of 15:21, 14 November 2018 by Speleo3 (talk | contribs) (Plugins Tutorial updated for PyQt5)
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Tutorial Plugins Tutorial updated for PyQt5
Official Release PyMOL v2.2 has been released on July 24, 2018.
POSF PyMOL Open-Source Fellowship program accepting applications for 2018-2019
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Note: PyMOL 1.8 can load biological units from mmCIF files with the assembly setting.

This script can be used to re-create biological units for proteins. (This was created as a workaround of PyMOL's semi-functioning Symexp command.) It's also a fun script to play with for learning about symmetry.

Usage

load /path/to/some/pdbFile.pdb
symMat = readSymmetry("/path/to/some/pdbFile.pdb","pdbFile")
biologicalUnit("mates", "pdbFile", symMat)

The Code

<source lang="python">

  1. Jason Vertrees <Jason-dot-Vertrees-at-schrodinger_dot_com>, 2010.

import pymol from pymol import cmd

def readSymmetry(inFile, verbose=None):

  ..→
A Random PyMOL-generated Cover. See Covers.