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New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
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Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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Get raw distances

Type Python Module
Download scripts/get_raw_distances.py
Author(s) Takanori Nakane and Thomas Holder
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

Included in psico
This command or function is available from psico, which is a PyMOL extension.

Module psico.querying

get_raw_distances can dump distance objects, created with distance.

This script also provides the command select_distances, which selects atoms from distance objects.

Warning: the atoms are hashed by coordinates; this could cause issues if coordinates are altered after distance objects have been created (see also dynamic_measures setting).

Usage

get_raw_distances [ names [, state [, selection ]]]
select_distances [ names [, name [, state [, selection [, cutoff ]]]]]

Arguments

  • names = string: names of distance objects (no wildcards!) {default: all measurement objects}
  • state = integer: object state {default: 1}
  • selection = string: atom selection {default: all}

Example

<syntaxhighlight lang="python"> fetch 2xwu, ..→

A Random PyMOL-generated Cover. See Covers.