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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
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Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Center

center translates the window, the clipping slab, and the origin to a point centered within the atom selection.

PYMOL API

cmd.center( string selection, int state = 0, int origin = 1 )

NOTES

  • state = 0 (default) use all coordinate states
  • state = -1 use only coordinates for the current state
  • state > 0 use coordinates for a specific state
  • origin = 1 (default) move the origin
  • origin = 0 leave the origin unchanged

User Example

  • Center around any given point
# define the point as x=1.0, y=2.0, z=3.0; replace [1.0, 2.0, 3.0] with your coordinate.
origin position=[1.0,2.0,3.0]
# center on it
center origin

SEE ALSO

Origin, Orient, Zoom

A Random PyMOL-generated Cover. See Covers.