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News & Updates Official Release PyMOL, AxPyMOL, and JyMOL v1.7.4 have all been released on December 2, 2014. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014. Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS. New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL. New Script cgo_arrow draws an arrow between two picked atoms. Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL. Older News See Older News.

Did you know... Colorblindfriendly Type Python Script Download scripts/colorblindfriendly.py Author(s) Jared Sampson License MIT This code has been put under version control in the project Pymol-script-repo Introduction Certain colors are indistinguishable to people with the various forms of color blindness, and therefore are better not used in figures intended for public viewing. This script generates a palette of named colors for PyMOL that are unambiguous both to colorblind and non-colorblind individuals. The colors listed here are defined according to recommendations by Okabe and Ito previously available at J*FLY (archived). This website is a good reference to consult when making all kinds of figures, not just those made using PyMOL. Colors These are the 0-255 RGB values from the J*FLY page that are used in the script, with the defined color names and alternate ..→

A Random PyMOL-generated Cover. See Covers.