News & Updates
| Official Release
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PyMOL, AxPyMOL, and JyMO v1.7 have all been released] today, January 14, 2014.
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| New Plugin
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Bondpack is a a collection of PyMOL plugins for easy visualization of atomic bonds.
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| New Plugin
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MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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| 3D using Geforce
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PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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| New Plugin
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GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
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| New Software
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CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
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| New Script
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cgo_arrow draws an arrow between two picked atoms.
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| Tips & Tricks
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Instructions for generating movie PDFs using .mpg movies from PyMOL.
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| Older News
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See Older News.
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Did you know...
dssp is a wrapper for the popular DSSP program, which computes secondary structure. The command updates PyMOL's ss atom property.
Installation
The dssp command is available from the psico package and requires the dssp binary (or mkdssp, dsspcmbi, dssp-2).
All dependencies are available from Anaconda Cloud:
conda install -c schrodinger pymol
conda install -c schrodinger pymol-psico
conda install -c salilab -c speleo3 dssp
Usage
dssp [ selection [, exe [, raw [, state ]]]]
Arguments
- selection = str: atom selection {default: all}
- exe = str: path to dssp binary {default: search $PATH for dsspcmbi, dssp, dssp-2, mkdssp}
- raw = str: atom property to assign the dssp secondary structure type to. This type will also be translated to PyMOL's H/S/L types and assiged to the ss property {default: }
- ..→
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 A Random PyMOL-generated Cover. See Covers.
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