sst is a wrapper for the SST secondary structural assignment web service. The command updates PyMOL's ss atom property.
SST does minimum message length inference of secondary structure based on C-alpha atom positions.
Usage
sst [ selection [, raw [, state ]]]
Arguments
- selection = str: atom selection {default: all}
- raw = str: atom property to assign the sst secondary structure type to. This type will also be translated to PyMOL's H/S/L types and assiged to the ss property {default: }
- state = int: object state {default: -1 (current state)}
Example
import psico.editing
fetch 1ubq, async=0
sst all, raw=custom
as cartoon
color gray
spectrum custom, selection=guide
set cartoon_discrete_colors, 1
label guide, custom
See Also
