Main Page

From PyMOLWiki
Revision as of 09:57, 11 September 2015 by Speleo3 (talk | contribs) (News update)
Jump to navigation Jump to search
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Cgo arrow

Type Python Module
Download scripts/cgo_arrow.py
Author(s) Thomas Holder
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

This script will draw a CGO arrow between two picked atoms.

Usage

cgo_arrow [ atom1 [, atom2 [, radius [, gap [, hlength [, hradius [, color [, name ]]]]]]]]

Example

run cgo_arrow.py

fetch 1rx1, async=0
preset.pretty("*")

cgo_arrow [34.9, 68.4, 19.1], A/164/O3X, gap=1.0

Cgo arrow example.png

A Random PyMOL-generated Cover. See Covers.