News & Updates
Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7.4 have all been released on December 2, 2014.
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New Plugin
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PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
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PyMOL Open-Source Fellowship
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Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
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Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014.
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Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014.
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New Plugin
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Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
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New Plugin
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MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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3D using Geforce
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PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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New Plugin
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GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
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New Software
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CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
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New Script
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cgo_arrow draws an arrow between two picked atoms.
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Tips & Tricks
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Instructions for generating movie PDFs using .mpg movies from PyMOL.
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Older News
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See Older News.
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Did you know...
fab builds peptide entities from sequence. The sequence must be specified in one-letter code. Several fragments will be created if the sequence contains spaces (chain breaks). To specify chain-id and residue number, an advanced syntax pattern like chain/resi/ can be put before each sequence fragment.
Similar functionality is also provided by the graphical Builder in "Protein" mode.
New in PyMOL version 1.2
USAGE
fab input [, name [, mode [, resi [, chain [, segi [, state [, dir [, hydro [, ss [, async ]]]]]]]]]]
ARGUMENTS
- input = string: Amino acid sequence in one-letter code
- name = string: name of object to create or modify {default: obj??}
- mode = string: Only supported mode is "peptide" {default: peptide}
- resi = integer: Residue number to start numbering from {default: 1}
- chain, segi = string: Chain id and segment id to assign
- state = integer: {default: -1}
- dir = 0/1: 0=append to N-terminus, 1=append to C-terminus {default: 1}
- hydro = 0/1: With or without hydrogens ..→
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A Random PyMOL-generated Cover. See Covers.
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