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Did you know...
dssp is a wrapper for the popular DSSP program, which computes secondary structure. The command updates PyMOL's ss atom property.
Installation
The dssp command is available from the psico package and requires the dssp binary (or mkdssp, dsspcmbi, dssp-2).
All dependencies are available from Anaconda Cloud:
conda install -c schrodinger pymol
conda install -c schrodinger pymol-psico
conda install -c salilab -c speleo3 dssp
Usage
dssp [ selection [, exe [, raw [, state ]]]]
Arguments
- selection = str: atom selection {default: all}
- exe = str: path to dssp binary {default: search $PATH for dsspcmbi, dssp, dssp-2, mkdssp}
- raw = str: atom property to assign the dssp secondary structure type to. This type will also be translated to PyMOL's H/S/L types and assiged to the ss property {default: }
- ..→
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