Main Page

From PyMOLWiki
Revision as of 11:45, 18 November 2013 by Inchoate (talk | contribs)
Jump to navigation Jump to search
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
New Plugin Bondpack is a a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

Hide

hide conceals atom and bond representations for a certain selection or other graphical objects like distances.

The available representations are:

  • lines
  • spheres
  • mesh
  • ribbon
  • cartoon
  • sticks
  • dots
  • surface
  • labels
  • nonbonded
  • nb_spheres

USAGE

hide representation [,object]
hide representation [,(selection)]
hide (selection)

PYMOL API

cmd.hide( string representation="", string selection="")

EXAMPLES

# hides all lines
hide lines,all

# hides all ribbons
hide ribbon

# hides all distances
hide dashes

# hides sticks in protA and all residues that aren't in the range of 40-65
hide sticks, protA and not i. 40-65

# hide hydrogen atoms
hide (hydro)  # or hide (h.)

SEE ALSO

Show, Enable, Disable, Suspend_updates

..→
A Random PyMOL-generated Cover. See Covers.