News & Updates
New Script
|
pymol2glmol is script to export a scene in pymol to a webpage for GLmol. GLmol is a molecular viewer for Web browsers written in WebGL/Javascript.
Like web Jmol, but MUCH faster. Try it out!
|
New Script
|
cyspka is an experimental surface cysteine pKa predictor.
|
New Plugin
|
Contact_Map_Visualizer visualize residues corresponding to the contact map
|
New Script
|
spectrum_states colors states of multi-state object
|
New Script
|
TMalign is a wrapper for the TMalign program
|
Gallery Updates
|
The gallery has been updated to include a few new ideas and scripts for rendering
|
New Script
|
save_settings can dump all changed settings to a file
|
Tips & Tricks
|
Instructions for generating 3D PDFs using PyMOL.
|
Wiki Update
|
Wiki has been updated. Please report any problems to the sysops.
|
New Scripts
|
Create objects for each molecule or chain in selection with split_object and split_chains
|
New Script
|
Rotkit: is a collection of usefull scripts to place your dye/molecule where you want. It includes a very handy, rotation around line, function.
|
New Script
|
Forster-distance-calculator: Can be used as a pymol-python shortcut to calculate the Förster distance between dyes from different companies. Useful, if the user have pymol installed, but not python. This script is meant as a tool to finding the right dyes, when labelling suitable positions for the site-directed cysteine mutants. See DisplacementMap.
|
New Script
|
propka: Fetches the pka values for your protein from the propka server. propka generates a pymol command file that make pka atoms, color and label them according to your protein. Inspection is made easy by grouping the pka atoms in the pymol menu.
|
Older News
|
See Older News.
|
|
Did you know...
A command to list a summary of the secondary structure for a selection. Use like "ss my_protein" where "my_protein" is the name of the chain or structure in view.
<source lang="python">
from pymol import cmd
from pymol import stored
def ss(selection):
class SSE(object):
def __init__(self, start, typ):
self.start, self.typ = start, typ
self.end = -1
def __repr__(self):
return "%s-%s %s" ..→
|
|
|
A Random PyMOL-generated Cover. See Covers.
|