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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com

News & Updates
New Script	spectrum_states colors states of multi-state object
New Script	TMalign is a wrapper for the TMalign program
Gallery Updates	The gallery has been updated to include a few new ideas and scripts for rendering
New Script	save_settings can dump all changed settings to a file
Tips & Tricks	Instructions for generating 3D PDFs using PyMOL.
Wiki Update	Wiki has been updated. Please report any problems to the sysops.
New Scripts	Create objects for each molecule or chain in selection with split_object and split_chains
New Script	Rotkit: is a collection of usefull scripts to place your dye/molecule where you want. It includes a very handy, rotation around line, function.
New Script	Forster-distance-calculator: Can be used as a pymol-python shortcut to calculate the Förster distance between dyes from different companies. Useful, if the user have pymol installed, but not python. This script is meant as a tool to finding the right dyes, when labelling suitable positions for the site-directed cysteine mutants. See DisplacementMap.
New Script	propka: Fetches the pka values for your protein from the propka server. propka generates a pymol command file that make pka atoms, color and label them according to your protein. Inspection is made easy by grouping the pka atoms in the pymol menu.
Older News	See Older News.

Did you know...
Get session Returns a dictionary representation the currently loaded PyMOL session.The session file (.pse) is a compressed version of its output. By using this API, user scripts can access many interesting properties which are otherwise inaccessible. Examples include Pymol2glmol and get_raw_distances scripts. WARNING: This API is undocumented API, intended for internal use. Use it only when it is necessary. Usage <source lang="python"> dict ..→

Usage