Main Page: Difference between revisions

Revision as of 20:19, 7 July 2009

Welcome to the PyMOL Wiki
We are the community-based support site for the popular molecular visualization program, PyMOL.

New Users
New users are encouraged to join. Feel free to add any appropriate content; make an account and get started!

Quick Links
Table of Contents	Index of all pages	PyMOL Cheat Sheet: PDF \| Wiki Page
Tutorials !	Commands	Settings: All \| Documented
Script Library !	Plugins	See All Categories
Frequently Asked Questions	Gallery \| Covers	About PyMOL
Track: Bugs Feature Req Support Req

News and Updates (archive)

PyMOL
♦ PyMOL 1.2 is out!
♦ Check out the artist who integrates PyMOL into his work.
♦ If you use the sequence viewer alot, or have lots of openGL text on the screen, try boosting your performance with Texture_fonts.
♦ PyMOL now integrates seamlessly with MS Powerpoint. See Axpymol.

Another cover made with PyMOL. See image details.

Scripts, Plugins & Tutorials
♦ MovieSchool — PyMOL Wiki's Movie School. Learn how to make movies in PyMOL!
♦ alphaToAll — Expands your desired alpha-carbon property down to all atoms in the residue.
♦ interfaceResidues — Finds interface residues in a complex.
♦ FindSurfaceResidues — Find and show (if you want) surface exposed resiues in PyMOL.
♦ ToGroup — Converts a multistate object into a group of single state objects.
♦ FindSeq — Find sequence or regular expression of amino acids in a protein.
♦ Modevectors — creates arrow plots for normal mode analysis (NMA), NMR ensembles and other cases where you want to point out differences between similar objects.
♦ Pucker — finds the sugar pucker information (phase, amplitude, pucker) for a given selection.

Screenshot of DrawBoundingBox in action.

Wiki
♦ Labels page was thoroughly refurbished.
♦ The Wiki experienced a few moments of downtime due to system maintenance. The downtime was <10 minutes.
♦ Please note the "Go" and "Search" buttons in the search bar. They're not the same, and entering text and hitting ENTER is the same as using the "Go" button. Please try using the "Search" button; we're using a new search engine and it has cool new features.
♦ Documented a few more settings. Also, check out the cool, Huge_surfaces page for handling very large objects and representing them as surfaces, in PyMOL.
♦ We got our 2,000,000th page view!

Sample Cover from the Covers gallery.

@@ Line 60: / Line 60: @@
 | style="padding: 2px 5px 0px 15px;"| &diams; '''PyMOL now integrates seamlessly with MS Powerpoint.  See [[Axpymol]].'''
 |}
-|valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:Image_large.png|125px]] Another cover made with PyMOL.'''Movie made with Pymol of MD simulation of protein-protein interaction''' is avialble inside pdf [[http://www.pymolwiki.org/index.php/File:SH3.pdf]] or High quality AVI [http://gepard.bioinformatik.uni-saarland.de/old_html/material/dl/SH3_large.avi] .
+|valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:Image_large.png|125px]] Another cover made with PyMOL.  See [[User:Mazen|image details]].
 |}
 |-