Commands: Difference between revisions

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You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following:
You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following:


<code>
*INPUT/OUTPUT
    INPUT/OUTPUT load     save     delete   quit
**[[load]]
    VIEW         turn     move     clip     rock
**[[save]]
                  show     hide     enable   disable
**[[delete]]
                  reset     refresh   rebuild  
**[[quit]]
                  zoom     origin   orient  
 
                  view     get_view set_view
*VIEW
    MOVIES       mplay     mstop     mset     mdo
**[[turn]]
                  mpng     mmatrix   frame
**[[move]]
                  rewind   middle   ending
**[[clip]]
                  forward   backward
**[[rock]]
    IMAGING       png       mpng
**[[show]]
    RAY TRACING   ray      
**[[hide]]
    MAPS         isomesh   isodot
**[[enable]]
    DISPLAY       cls       viewport splash  
**[[disable]]
    SELECTIONS   select    mask 
**[[reset]]
    SETTINGS     set       button
**[[refresh]]
    ATOMS         alter     alter_state  
**[[rebuild]]
    EDITING       create   replace   remove   h_fill   remove_picked
**[[zoom]]
                  edit     bond     unbond   h_add   fuse      
**[[origin]]
                  undo     redo     protect   cycle_valence attach
**[[orient]]
    FITTING       fit       rms       rms_cur   pair_fit
**[[view]]
                  intra_fit intra_rms intra_rms_cur  
**[[get_view]]
    COLORS       color     set_color
**[[set_view]]
    HELP         help     commands
 
    DISTANCES     dist       
*MOVIES
    STEREO       stereo
**[[mplay]]
    SYMMETRY     symexp
**[[mstop]]
    SCRIPTS       @         run
**[[mset]]
    LANGUAGE     alias     extend
**[[mdo]]
</code>
**[[mpng]]
**[[mmatrix]]
**[[frame]]
**[[rewind]]
**[[middle]]
**[[ending]]
**[[forward]]
**[[backward]]
 
*IMAGING
**[[png]]
**[[mpng]]
 
*RAY TRACING
**[[ray]]
 
*MAPS
**[[isomesh]]
**[[isodot]]
 
*DISPLAY
**[[cls]]
**[[viewport]]
**[[splash]]
 
*SELECTIONS
**[[select]]
**[[mask]]
    
*SETTINGS
**[[set]]
**[[button]]
 
*ATOMS
**[[alter]]
**[[alter_state]]
 
*EDITING
**[[create]]
**[[replace]]
**[[remove]]
**[[h_fill]]
**[[remove_picked]]
**[[edit]]
**[[bond]]
**[[unbond]]
**[[h_add]]
**[[fuse]]
**[[undo]]
**[[redo]]
**[[protect]]
**[[cycle_valence]]
**[[attach]]
 
*FITTING
**[[fit]]
**[[rms]]
**[[rms_cur]]
**[[pair_fit]]
**[[intra_fit]]
**[[intra_rms]]
**[[intra_rms_cur]]
 
*COLORS
**[[color]]
**[[set_color]]
 
*HELP
**[[help]]
**[[commands]]
 
*DISTANCES
**[[dist]]      
 
*STEREO
**[[stereo]]
 
*SYMMETRY
**[[symexp]]
 
*SCRIPTS
**[[@]]
**[[run]]
 
*LANGUAGE
**[[alias]]
**[[extend]]


[[Category:Commands]]
[[Category:Commands]]

Revision as of 06:43, 27 April 2009

Commands are functions in pymol that are used for viewing, manipulating, and storing molecules.

The PyMOLWiki has a complete list of commands in PyMOL. Just check out the Commands' category page.

You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following:

  • RAY TRACING
Retrieved from "https://pymolwiki.org/index.php?title=Commands&oldid=6276"