Main Page: Difference between revisions

Revision as of 14:39, 21 May 2008

Welcome to the PyMOL Wiki
We are the community-based support site for the popular molecular visualization program, PyMOL.

New Users
New users are encouraged to join. Feel free to add any appropriate content; make an account and get started!

Quick Links
Table of Contents	Index of all pages	PyMOL Cheat Sheet: PDF Wiki Page
Tutorials	Commands	Settings: All Documented
Script Library	Plugins	See All Categories
Frequently Asked Questions	How to get involved!	About PyMOL

News and Updates (archive)

Wiki
♦ Google Analytics cookies/tracking added to the wiki. We're just doing hit counts and watching what people do so we can improve the wiki.
♦ PyMOL Cheat Sheet (reference card) has been donated. It's also posted in the table above for quick access.
♦ Google Summer of Code 2008 for PyMOL has been created. Update: PyMOL wasn't chosen, so this page is now about ideas for improving PyMOL.
♦ Added a special category/section for active PyMOL Tutorials. These are pages not just with information, but easy to understand, step-by-step pages from which to learn.

Screenshot of the donated PyMOL reference card.

PyMOL
♦ group command has been added.
♦ The truly awesome grid_mode setting has been added.
♦ Ellipsoids representation added for drawing thermal ellipsoids.

Screenshot of Grid Mode in action.

Scripts & Plugins
♦ ImmersiveViz -- Headtracking user interface for PyMOL (watch the video)!
♦ Colorama --a PyMOL plugin which allows to color objects using adjustable scale bars
♦ ProMOL plugin added. Catalytic site prediction, other tools. Redirects to website.
♦ EMovie plugin added. Easy movies in PyMol using a GUI.
♦ DYNMAP plugin page created. Check it out!
♦ EZ-Viz

Screenshot of Colorama.

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 ! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Wiki
+|-
+| style="padding: 3px 5px 10px 15px;"| &diams; [http://www.google.com/analytics/ Google Analytics] cookies/tracking added to the wiki.  We're just doing hit counts and watching what people do so we can improve the wiki.
 |-
 | style="padding: 3px 5px 10px 15px;"| &diams; [[CheatSheet|PyMOL Cheat Sheet]] (reference card) has been donated.  It's also posted in the table above for quick access.
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 | style="padding: 3px 5px 10px 15px;"| &diams; Added a special category/section for active PyMOL [[:Category:Tutorials|Tutorials]].  These are pages not just with information, but easy to understand, step-by-step pages from which to learn.
-|-
-| style="padding: 3px 5px 10px 15px;"| &diams; Updated the wiki.  Also installed the newer GeSHI extension.  Please keep an eye out for source code that is improperly tagged and so improperly formatted.  See [http://www.mediawiki.org/wiki/Extension:SyntaxHighlight_GeSHi#Parameters GeSHI Parameters].
-|-
-| style="padding: 3px 5px 10px 15px;"| &diams; Adding a special category/section for active PyMOL [[:Category:Development|Development]].
 |}
 |valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:refcard.png|155px]] Screenshot of the donated [[CheatSheet|PyMOL reference card]].
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 | style="padding: 3px 5px 10px 15px;"| &diams; [[Ellipsoids]] representation added for drawing thermal ellipsoids.
-|-
-| style="padding: 3px 5px 10px 15px;"| &diams; PyMOL 1.0 has been released!
-|-
-| style="padding: 3px 5px 10px 15px;"| &diams; [http://delsci.info/dsc/ PyMOL Official Documentation] is also available for subscribers.
 |}
-|valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:Gm1.png|155px]] Screenshot of [[grid_mode|Grid Mode]] in action.
+|valign="bottom" width="150px" style="padding: 0 20px 20px 0" |[[Image:Gm1.png|125px]] Screenshot of [[grid_mode|Grid Mode]] in action.
 |}
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Revision as of 14:39, 21 May 2008