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News & Updates Official Release PyMOL v1.8.4 has been released on October 4, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... CollapseSel = Overview = CollapseSel is a small utility function to compress strings for selections. So, if you have a selection with residues 1+2+3+4+20+21+22+100-120 this will return, 1-4+20-22+100-120. CollapseIDs is a small utility function to compress strings for an array of IDs. This does NOT have the logic for detecting duplicates, CollapseSel does. Example run /dir/to/collapseSel.py fetch 1cll select EE, resn GLU print collapseSel("EE") # # and PyMOL should output: # # 6-7+11+14+31+45+47+54+67+82-84+87+104+114+119-120+123+127+139-140 # The Code <source lang="python"> import pymol from pymol import stored def collapseIDs(ids): """ Helper function to make a smart list of IDs: eg turns 1+2+3+4+5 into 1-5. """ rVal = [] if len(ids)==0: return "" scanning=False anchor = 0 start = 0 # 1-5 7-10 12 21-23 for cur in range(0,len(ids)-1): if ids[cur]+1 == ids[cur+1]: if scanning: scanning=True continue else: scanning=True start = cur else: if ..→

A Random PyMOL-generated Cover. See Covers.