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Revision as of 18:36, 4 January 2016

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Read Molstr

read_molstr reads an MDL MOL format file as a string

PYMOL API ONLY

cmd.read_molstr( string molstr, string name, int state=0, \
  int finish=1, int discrete=1 )

NOTES

  • state is a 1-based state index for the object, or 0 to append.
  • finish is a flag (0 or 1) which can be set to zero to improve performance when loading large numbers of objects, but you must call finish_object when you are done.
  • discrete is a flag (0 or 1) which tells PyMOL that there will be no overlapping atoms in the file being loaded. discrete objects save memory but can not be edited.
A Random PyMOL-generated Cover. See Covers.