Main Page

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

New accounts: email jason (dot) vertrees (@) gmail dot com

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Mpng mpng writes a series of numbered movie frames to png files with the specified prefix. If the ray_trace_frames variable is non-zero, these frames will be ray-traced. This operation can take several hours for a long movie. Be sure to disable cache_frames when issuing this operation on a long movie (>100 frames) to avoid running out of memory. Usage mpng prefix [, first [, last [, preserve [, modal [, mode [, quiet [, width [, height ]]]]]]]] Options "first" and "last" can be used to specify an inclusive interval over which to render frames. Thus, you can write a smart Python program that will automatically distribute rendering over a cluster of workstations. If these options are left at zero, then the entire movie will be rendered. Arguments prefix = string: filename prefix for saved images -- output files will be numbered and end in ".png" first = integer: starting frame {default: 0 (first frame)} last = integer: last frame {default: 0 (last frame)} ..→

A Random PyMOL-generated Cover. See Covers.