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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
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! New Plugin
| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
|-
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! Official Release
! Official Release

Revision as of 08:30, 23 November 2015

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Find symbol

= Overview =

This script looks for the given symbol in a given module(s). This can be handy if you forgot which module something is in or just want to query for a substring in a set of modules.

Usage

# search pymol and pymol.cmd for any symbol starting with 'mov'

fs("mov")
['cmd.get_movie_length',
 'cmd.get_movie_locked',
 'cmd.get_movie_playing',
 'cmd.mmove',
 'cmd.move',
 'cmd.movie',
 'cmd.moving',
 'cmd.remove',
 'cmd.remove_picked']

# Search PyMOL's CMD module for something called align

fs("align", "cmd")
['cmd.align', 'cmd.alignto', 'cmd.cealign', 'cmd.get_raw_alignment']

The Code

<source lang="python"> import pymol import inspect import pprint

def fs(needle,haystack=["pymol","cmd"]):

   """
   This script will find the 'needle' in the 'haystack,' where the former is
   a symbol to be found in the latter, which is a module.
   """
   
   if type("") == type(haystack):
       haystack = [haystack,]
   for mod in haystack:
       found_list = map(lambda x: "%s.%s" %  ..→
A Random PyMOL-generated Cover. See Covers.