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(1.8 release)
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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
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! Official Release
| [http://pymol.org PyMOL v1.8.0 has been released] on Nov 18, 2015.
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! PyMOL Open-Source Fellowship
! PyMOL Open-Source Fellowship

Revision as of 16:30, 18 November 2015

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Removealt

Type Python Script
Download scripts/removealt.py
Author(s) Jason Vertrees
License Free
This code has been put under version control in the project Pymol-script-repo

removeAlt removes all atoms from obj that have alternate locations but aren't altloc keep.

Usage

removealt [ obj [, keep ]]

Example

import removealt

fetch 1hxb, async=0

select ligA, alt a
select ligB, alt b

count_atoms ligA    # 49 atoms
count_atoms ligB    # 49 atoms

removealt 1hxb, b

count_atoms ligA    # 0 atoms
count_atoms ligB    # 49 atoms

See Also

Handling Alternate Locations and alter

A Random PyMOL-generated Cover. See Covers.