Main Page: Difference between revisions

From PyMOLWiki
Jump to navigation Jump to search
(News update)
(Replace link to "Google search" page with link to "PyMOL mailing list" page)
Line 17: Line 17:
| style="font-size: 1.1em; color #61021F; padding: 0.5em 1em 0.5em 3em;"|'''[[Gallery]]''' | '''[[Covers]]'''
| style="font-size: 1.1em; color #61021F; padding: 0.5em 1em 0.5em 3em;"|'''[[Gallery]]''' | '''[[Covers]]'''
||'''[[CheatSheet|PyMOL Cheat Sheet]]''' (''[[Media:PymolRef.pdf|PDF]]'')
||'''[[CheatSheet|PyMOL Cheat Sheet]]''' (''[[Media:PymolRef.pdf|PDF]]'')
||'''[[GoogleSearch]]'''
||'''[[PyMOL_mailing_list|Getting Help]]'''
|}
|}



Revision as of 03:29, 21 October 2015

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Inertia tensor

Type Python Module
Download scripts/inertia_tensor.py
Author(s) Mateusz Maciejewski
License MIT
This code has been put under version control in the project Pymol-script-repo
It.png

This script will draw the eigenvectors of the inertia tensor of the selected part of the molecule.

Usage

tensor selection, name, model

Examples

To draw the inertia tensor of the first model in PDB file 4B2R do:

fetch 4b2r, async=0
hide lines
show cartoon
run inertia_tensor.py
tensor 4b2r & n. n+ca+c & i. 569-623, tensor_dom11, 1

Reference

A figure generated using this script can be seen in the following reference:

  • Estimation of interdomain flexibility of N-terminus of factor H using residual dipolar couplings. Maciejewski M, Tjandra N, Barlow PN. Biochemistry. 50(38) 2011, p. 8138-49, fig. 1 doi:10.1021/bi200575b
A Random PyMOL-generated Cover. See Covers.